Mercurial > repos > nick > allele_counts_1
changeset 16:25e8f4cf2a81
allele-counts.xml: Fix bug causing failure when no seed is provided.
| author | nicksto <nmapsy@gmail.com> |
|---|---|
| date | Wed, 09 Dec 2015 11:31:13 -0500 |
| parents | 2aa561f29da4 |
| children | 44c3abd1b767 |
| files | allele-counts.xml |
| diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/allele-counts.xml Wed Dec 09 11:13:51 2015 -0500 +++ b/allele-counts.xml Wed Dec 09 11:31:13 2015 -0500 @@ -1,6 +1,10 @@ <tool id="allele_counts_1" version="1.2" name="Variant Annotator"> <description> process variant counts</description> - <command interpreter="python">allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt -r $seed</command> + <command interpreter="python">allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt + #if $seed: + -r $seed + #end if + </command> <inputs> <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/> <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/>