Mercurial > repos > nate > data_manager_hisat2_index_builder

changeset 3:c6a1b04e2f2b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 9758b72ead4e42804f77ff7166bf6f860c01de11
author nate
date Tue, 29 Jul 2025 17:43:03 +0000
parents b3d94db291c1
children 496a8a7f35f9
files data_manager/hisat2_index_builder.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/hisat2_index_builder.xml	Tue Jul 29 17:09:29 2025 +0000
+++ b/data_manager/hisat2_index_builder.xml	Tue Jul 29 17:43:03 2025 +0000
@@ -26,7 +26,7 @@
 
         mkdir -p '${out_file.extra_files_path}' &&
         ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' &&
-        working=$(pwd)` &&
+        working="\$(pwd)"` &&
         cd '${out_file.extra_files_path}' &&
 
         hisat2-build -p "\${GALAXY_SLOTS:-1}"