Mercurial > repos > nanette > nanettetest3

diff test_script_path.xml @ 6:066c5504de31 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author nanette
date Wed, 21 Aug 2013 04:51:37 -0400
parents 6c839f8050f1
children a303f3ffa153
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test_script_path.xml	Wed Aug 21 04:51:37 2013 -0400
@@ -0,0 +1,30 @@
+<tool id="script_path" name="nanettetest3" version="1.0.0">
+
+	<description>script path</description>
+	<requirements>
+		<requirement type="set_environment">SCRIPT_PATH</requirement>
+	</requirements>
+	<command interpreter="python">
+		test_script_path.py --input1 $input1 --output1 $output1 --myflag \$SCRIPT_PATH
+	</command>
+        <inputs>
+            <param label="Gene Universe file" name="input1" type="data" format="tabular" help="A tabular file with the full set of genes from the study (gene universe)"></param>
+
+        </inputs>
+	<outputs>
+		<data format="tabular" name="output1" />
+	</outputs>
+	<requirements>
+	</requirements>
+	<tests>
+          <test>
+          </test>
+	</tests>
+	<help>
+		
+**What it does**
+
+This tool uses the topGO R package to determine the enriched GO terms, for one or more gene lists simultaneously. 
+
+        </help>
+</tool>