view test_script_path.xml @ 2:6c839f8050f1 draft

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<tool id="script_path" name="nanettetest3" version="1.0.0">

	<description>script path</description>
	<requirements>
		<requirement type="set_environment">SCRIPT_PATH</requirement>
	</requirements>
	<command interpreter="python">
		test_script_path.py --input1 $input1 --output1 $output1 --myflag \$SCRIPT_PATH
	</command>
        <inputs>
            <param label="Gene Universe file" name="input1" type="data" format="tabular" help="A tabular file with the full set of genes from the study (gene universe)"></param>

        </inputs>
	<outputs>
		<data format="tabular" name="output1" />
	</outputs>
	<requirements>
	</requirements>
	<tests>
          <test>
          </test>
	</tests>
	<help>
		
**What it does**

This tool uses the topGO R package to determine the enriched GO terms, for one or more gene lists simultaneously. 

        </help>
</tool>