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1 <tool id="script_path" name="nanettetest3" version="1.0.0">
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2
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3 <description>script path</description>
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4 <requirements>
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5 <requirement type="set_environment">SCRIPT_PATH</requirement>
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6 </requirements>
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7 <command interpreter="python">
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8
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8 test_script_path.py --input1 $input1 --output1 $output1 --output2 $output2 --myflag \$SCRIPT_PATH
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9 </command>
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10 <inputs>
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11 <param label="Gene Universe file" name="input1" type="data" format="tabular" help="A tabular file with the full set of genes from the study (gene universe)"></param>
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12
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13 </inputs>
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14 <outputs>
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15 <data format="tabular" name="output1" />
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8
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16 <data format="pdf" name="output2" />
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2
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17 </outputs>
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18 <requirements>
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19 </requirements>
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20 <tests>
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21 <test>
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22 </test>
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23 </tests>
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24 <help>
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25
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26 **What it does**
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27
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28 This tool uses the topGO R package to determine the enriched GO terms, for one or more gene lists simultaneously.
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29
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30 </help>
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31 </tool>
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