Mercurial > repos > mzytnicki > s_mart

changeset 133:305a4ea167eb draft

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Uploaded
author mzytnicki
date Thu, 19 Sep 2013 11:12:58 -0400
parents a248ede412eb
children 83170a33618c
files tool_conf.xml
diffstat 1 files changed, 11 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/tool_conf.xml	Wed Sep 18 09:47:08 2013 -0400
+++ b/tool_conf.xml	Thu Sep 19 11:12:58 2013 -0400
@@ -1,48 +1,45 @@
-  <section id="s_mart" name="S-MART" version="">
-    <label id="Smart_Comparison" text="Comparison Tools" version=""/>
-      <tool file="s_mart/CompareOverlappingSmallQuery.xml"/>
-      <tool file="s_mart/CompareOverlappingSmallRef.xml"/>
-      <tool file="s_mart/compareOverlapping.xml"/>
+  <section id="s_mart" name="S-MART" version="3.0">
+    <label id="Smart_Comparison" text="Comparison Tools" version="3.0"/>
+      <tool file="s_mart/CompareOverlappingAdapt.xml"/>
       <tool file="s_mart/getDifference.xml"/>
       <tool file="s_mart/computeCoverage.xml"/>
       <tool file="s_mart/GetFlanking.xml"/>
       <tool file="s_mart/GetDifferentialExpression.xml"/>
-    <label id="Smart_Merge" text="Merge Tools" version=""/>
+    <label id="Smart_Merge" text="Merge Tools" version="3.0"/>
       <tool file="s_mart/clusterize.xml"/>
       <tool file="s_mart/mergeTranscriptLists.xml"/>
       <tool file="s_mart/CollapseReads.xml"/>
       <tool file="s_mart/clusterizeBySlidingWindows.xml"/>
       <tool file="s_mart/mergeSlidingWindowsClusters.xml"/>
-    <label id="Smart_Visualization" text="Visualization Tools" version=""/>
+    <label id="Smart_Visualization" text="Visualization Tools" version="3.0"/>
       <tool file="s_mart/getDistribution.xml"/>
       <tool file="s_mart/getDistance.xml"/>
       <tool file="s_mart/getSizes.xml"/>
       <tool file="s_mart/plotCoverage.xml"/>
       <tool file="s_mart/WrappGetLetterDistribution1.xml"/>
       <tool file="s_mart/plotTranscriptList.xml"/>
-    <label id="Smart_Sequence" text="Sequence Tools" version=""/>
+    <label id="Smart_Sequence" text="Sequence Tools" version="3.0"/>
       <tool file="s_mart/CountReadGCPercent.xml"/>
-    <label id="Smart_Modification" text="Modification Tools" version=""/>
+    <label id="Smart_Modification" text="Modification Tools" version="3.0"/>
       <tool file="s_mart/modifyGenomicCoordinates.xml"/>
       <tool file="s_mart/modifySequenceList.xml"/>
       <tool file="s_mart/trimSequences.xml"/>
-    <label id="Smart_Selection" text="Selection Tools" version=""/>
+    <label id="Smart_Selection" text="Selection Tools" version="3.0"/>
       <tool file="s_mart/getExons.xml"/>
       <tool file="s_mart/getIntrons.xml"/>
       <tool file="s_mart/restrictFromSize.xml"/>
       <tool file="s_mart/restrictTranscriptList.xml"/>
-    <label id="Smart_Conversion" text="Conversion Tools" version=""/>
+    <label id="Smart_Conversion" text="Conversion Tools" version="3.0"/>
       <tool file="s_mart/ConvertTranscriptFile.xml"/>
       <tool file="s_mart/coordinatesToSequence.xml"/>
       <tool file="s_mart/mapperAnalyzer.xml"/>
-    <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/>
+    <label id="Smart_WIG" text="WIG Manipulation Tools" version="3.0"/>
       <tool file="s_mart/getWigData.xml"/>
       <tool file="s_mart/getWigDistance.xml"/>
       <tool file="s_mart/getWigProfile.xml"/>
-    <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/>
+    <label id="Smart_GFF" text="GFF Manipulation Tools" version="3.0"/>
       <tool file="s_mart/CleanTranscriptFile.xml"/>
       <tool file="s_mart/changeTagName.xml"/>
       <tool file="s_mart/changeGffFeatures.xml"/>
-      <tool file="s_mart/removeExonLines.xml"/>
       <tool file="s_mart/SelectByTag.xml"/>
   </section>