Mercurial > repos > mzeidler > virana_main

changeset 31:cb323c0ab13d draft

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Uploaded
author mzeidler
date Mon, 30 Sep 2013 12:54:20 -0400
parents 9c533ff4b392
children 13083e0615da
files vhom_region.xml
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/vhom_region.xml	Mon Sep 30 12:50:27 2013 -0400
+++ b/vhom_region.xml	Mon Sep 30 12:54:20 2013 -0400
@@ -6,7 +6,6 @@
         <requirement type="package" version="1.02.00">lastz</requirement>
         <requirement type="package" version="1.0">virana_python</requirement>
         <requirement type="package" version="2.8">jalview</requirement>
-        <requirement type="set_environment">JALVIEW_DIR</requirement>
     </requirements>
 
     <command interpreter="python">vhom_regionplot.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
@@ -45,7 +44,7 @@
     
     --output_dir ${hom_output.files_path}
     
-    --jalview_jar_dir $JALVIEW_DIR
+    --jalview_jar_dir \$JALVIEW_DIR
     
     
     --region_stats $stat_output