Mercurial > repos > mzeidler > virana_main
changeset 44:a8b31d446fec draft default tip
updated vhom regions with multiple hit file input and adapted visualization
| author | mzeidler |
|---|---|
| date | Mon, 04 Nov 2013 11:57:55 -0500 |
| parents | c74e70b459dd |
| children | |
| files | vhom_region.xml |
| diffstat | 1 files changed, 13 insertions(+), 3 deletions(-) [+] |
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--- a/vhom_region.xml Mon Nov 04 11:54:58 2013 -0500 +++ b/vhom_region.xml Mon Nov 04 11:57:55 2013 -0500 @@ -1,4 +1,4 @@ -<tool id="vhom_region" name="Virana Homologous Groups" version="1.1.1"> +<tool id="vhom_region" name="Virana Homologous Groups" version="1.1.2"> <description>Derive homologous groups and regions from hit files. </description> @@ -10,7 +10,12 @@ <command interpreter="python">vhom_regionplot.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output - --virana_hits $virana_hits + --virana_hits $virana_hit + + #for $i , $s in enumerate($hit_repeat) + --virana_hits $s.virana_hits + #end for + #if $cdna --cdna $cdna @@ -53,7 +58,12 @@ <inputs> - <param name="virana_hits" type="data" format="hit_bz2" label="Add hit file for analysis" /> + <param name="virana_hit" type="data" format="hit_bz2,hit" label="Add hit file for analysis" /> + + <repeat name="hit_repeat" title="extra hit file"> + <param name="virana_hits" type="data" format="hit_bz2,hit" label="Add hit file for analysis" /> + </repeat> + <param name="cdna" type="data" format="fasta" optional="True" label="Input fasta file containing human cDNA records" />