Mercurial > repos > mzeidler > virana2

changeset 27:1acf4f8a5e9f draft

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Uploaded
author mzeidler
date Tue, 24 Sep 2013 17:50:09 -0400
parents 85f16ebbd60b
children 5943563bff90
files vhom_region.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/vhom_region.xml	Tue Sep 24 17:49:04 2013 -0400
+++ b/vhom_region.xml	Tue Sep 24 17:50:09 2013 -0400
@@ -7,8 +7,8 @@
         <requirement type="package" version="1.0">virana_python</requirement>
     </requirements>
 
-    <command interpreter="python">vhom_regionplot.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
-        
+    <command interpreter="python">vhom_regions.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
+    
     --virana_hits $virana_hits
     
     #if $cdna
@@ -43,6 +43,7 @@
     
     --output_dir ${hom_output.files_path}
     
+    --jalview_jar_dir jalview
     
     --region_stats $stat_output
     </command>