# HG changeset patch
# User mzeidler
# Date 1380059409 14400
# Node ID 1acf4f8a5e9fb004cfbb4df315f1d7606125483e
# Parent  85f16ebbd60b3f2a02c1417f95e876120cc2e9c7
Uploaded

diff -r 85f16ebbd60b -r 1acf4f8a5e9f vhom_region.xml
--- a/vhom_region.xml	Tue Sep 24 17:49:04 2013 -0400
+++ b/vhom_region.xml	Tue Sep 24 17:50:09 2013 -0400
@@ -7,8 +7,8 @@
         <requirement type="package" version="1.0">virana_python</requirement>
     </requirements>
 
-    <command interpreter="python">vhom_regionplot.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
-        
+    <command interpreter="python">vhom_regions.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
+    
     --virana_hits $virana_hits
     
     #if $cdna
@@ -43,6 +43,7 @@
     
     --output_dir ${hom_output.files_path}
     
+    --jalview_jar_dir jalview
     
     --region_stats $stat_output
     </command>