Mercurial > repos > mzeidler > virana2
view fasta_to_bwa_index_converter.xml @ 60:7352fecc9860 draft default tip
Uploaded
author | mzeidler |
---|---|
date | Sun, 29 Sep 2013 14:31:15 -0400 |
parents | 4cc84d6a7b21 |
children |
line wrap: on
line source
<tool id="vmap_dnaindex" name="VMap DNAIndex" version="1.0.0"> <requirements> <requirement type="package" version="0.7.4">bwa</requirement> <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="1.0">virana_python</requirement> </requirements> <command interpreter="python">vmap_dnaindex.py --html_file $output --index_dir ${output.files_path} --dir ${output.files_path} --reference_file $input 2>&1 </command> <inputs> <param name="input" format="fasta" type="data" label="Fasta file"/> </inputs> <outputs> <data name="output" format="bwa_index"/> </outputs> </tool>