Mercurial > repos > mzeidler > virana2
view fasta_to_star_index_converter.xml @ 9:312cb1b2d3cd draft
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author | mzeidler |
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date | Tue, 24 Sep 2013 14:22:46 -0400 |
parents | 3ba5983012cf |
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<tool id="vmap_rnaindex" name="VMap RNAIndex" version="1.0.0"> <requirements> <requirement type="package" version="2.3.0">STAR</requirement> <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="1.0">virana_python</requirement> </requirements> <command interpreter="python">vmap_rnaindex.py --html_file $output --dir ${output.files_path} --index_dir ${output.files_path} --reference_file $input 2>&1 </command> <inputs> <param name="input" format="fasta" type="data" label="Fasta file"/> </inputs> <outputs> <data name="output" format="star_index"/> </outputs> </tool>