view vref_blast.xml @ 2:24a2978f8ffc draft

tool_dependencies with ftputil > 2.3 with statment bug fix

<tool id="vref_blast" name="Virana Blast References">

<description>Obtains blast databases. </description>

	<requirements>
        <requirement type="package" version="1.0">virana_python</requirement>
        <requirement type="package" version="1.7.1">numpy</requirement>
        <requirement type="package" version="1.61">biopython</requirement>

    </requirements>

    <command interpreter="python">vref.py blast --output_path $output 
    
    #if $database
        #set $groups = str($database).split(",")
        #for $ref in $groups:
            --reference_database $ref
        #end for
    #end if
    
    
    </command>
    
    
    <inputs>
        <param name="database" type="select" label="choose BLAST databases" multiple="true" display="checkboxes">
            <option value="nr">nr</option>
            <option value="nt">nt</option>
        </param>

    
    </inputs>
    
        
    <outputs>
        <data format="blastdb" name="output" label="blast_ref.blastdb"/>
    </outputs>

</tool>