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1 <tool id="vref_blast" name="Virana Blast References">
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2
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3 <description>Obtains blast databases. </description>
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4
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5 <requirements>
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6 <requirement type="package" version="1.0">virana_python</requirement>
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7 <requirement type="package" version="1.7.1">numpy</requirement>
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8 <requirement type="package" version="1.61">biopython</requirement>
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9
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10 </requirements>
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11
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12 <command interpreter="python">vref.py blast --output_path $output
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13
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14 #if $database
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15 #set $groups = str($database).split(",")
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16 #for $ref in $groups:
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17 --reference_database $ref
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18 #end for
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19 #end if
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20
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21
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22 </command>
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23
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24
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25 <inputs>
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26 <param name="database" type="select" label="choose BLAST databases" multiple="true" display="checkboxes">
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27 <option value="nr">nr</option>
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28 <option value="nt">nt</option>
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29 </param>
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30
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31
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32 </inputs>
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33
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34
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35 <outputs>
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36 <data format="blastdb" name="output" label="blast_ref.blastdb"/>
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37 </outputs>
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38
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39 </tool> |
