Mercurial > repos > mzeidler > virana

changeset 35:e59d8289935d draft

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Uploaded
author mzeidler
date Mon, 23 Sep 2013 10:32:01 -0400
parents 73c0edc69762
children 55374722c6f5
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Sep 23 10:01:13 2013 -0400
+++ b/tool_dependencies.xml	Mon Sep 23 10:32:01 2013 -0400
@@ -1,25 +1,12 @@
 <tool_dependency>
-    <package name="numpy" version="1.7.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PYTHONPATH_NUMPY" action="set_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-    </package>
     <package name="virana_python" version="1.0">
         <install version="1.0">
             <actions>
                 <action type="setup_virtualenv"> plumbum==1.3.0
                                                  pysam==0.7.5
+                                                 numpy==1.5.1
+                                                 matplotlib==1.2.1
                                                  biopython==1.61
-                                                 matplotlib==1.2.1
                                                  htseq==0.5.4
                                                  ftputil==2.2.3</action>
             </actions>