Mercurial > repos > mzeidler > virana
changeset 29:5e938e5eb46f draft
Uploaded
author | mzeidler |
---|---|
date | Mon, 23 Sep 2013 08:57:57 -0400 |
parents | b1627b8843ae |
children | 3cee6b37cdcf |
files | tool_dependencies.xml |
diffstat | 1 files changed, 21 insertions(+), 13 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Mon Sep 23 07:10:59 2013 -0400 +++ b/tool_dependencies.xml Mon Sep 23 08:57:57 2013 -0400 @@ -42,6 +42,22 @@ </actions> </install> </package> + <package name="freetype" version="2.4.11"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/freetype/freetype2/2.4.11/freetype-2.4.11.tar.bz2</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR/freetype/</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + <action type="set_environment"> + <environment_variable name="PATH" action="append_to">$INSTALL_DIR/freetype/bin/</environment_variable> + <environment_variable name="FREETYPE_LIB_DIR" action="set_to">$INSTALL_DIR/freetype/lib/</environment_variable> + <environment_variable name="FREETYPE_INCLUDE_DIR" action="set_to">$INSTALL_DIR/freetype/include/</environment_variable> + </action> + </actions> + </install> + </package> + <package name="matplotlib" version="1.2.1"> <install version="1.0"> <actions> @@ -52,7 +68,9 @@ <!-- install matplotlib --> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY && + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY && + export CPLUS_INCLUDE_PATH=$FREETYPE_INCLUDE_DIR:$FREETYPE_INCLUDE_DIR/freetype2/ && + export LIBRARY_PATH=$FREETYPE_LIB_DIR && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin </action> <action type="set_environment"> @@ -67,23 +85,13 @@ <package name="htseq" version="0.5.4"> <install version="1.0"> <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" > - <package name="biopython" version="1.6.2"/> - </repository> - </action> - <action type="set_environment_for_install"> - <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" > - <package name="matplotlib" version="1.2.1"/> - </repository> - </action> + <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && export PATH=$PATH:$PATH_NUMPY && export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY && - python setup.py install --install-lib $INSTALL_DIR/lib/python + python setup.py install --install-lib $INSTALL_DIR/lib/python --user --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>