Mercurial > repos > mvdbeek > docker_toolfactory_alpha

changeset 3:477eac6c4cea

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Fix bioconductor package installation.
author mvdbeek
date Wed, 03 Dec 2014 01:47:58 +0100
parents 5b930e77b1f3
children de4889098f45
files Dockerfile
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/Dockerfile	Wed Dec 03 00:26:43 2014 +0100
+++ b/Dockerfile	Wed Dec 03 01:47:58 2014 +0100
@@ -25,7 +25,7 @@
 
 RUN pip install numpy pysam tornado matplotlib pip pandas ipython rpy2
 
-RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite("DESeq", "DESeq2", "edgeR", "EDASeq")'
+RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite(c("DESeq", "DESeq2", "edgeR", "EDASeq"))'
 RUN Rscript -e 'install.packages(c("latticeExtra", "ggplot2", "reshape", "gridExtra"), dependencies=TRUE, repos="http://cran.us.r-project.org")'
 
 #add galaxy user (could be any username).