Mercurial > repos > mvdbeek > dapars
changeset 15:8af6d4ad2f0a draft
planemo upload for repository https://github.com/mvdbeek/dapars commit b1b007c561ea6c9db145c88b6b128d66ecd05e24-dirty
| author | mvdbeek |
|---|---|
| date | Fri, 30 Oct 2015 07:19:14 -0400 |
| parents | ea5d573d6d40 |
| children | f8bb40b2ff31 |
| files | dapars.py dapars.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/dapars.py Fri Oct 30 06:58:57 2015 -0400 +++ b/dapars.py Fri Oct 30 07:19:14 2015 -0400 @@ -41,7 +41,7 @@ help="minimum coverage in each aligment to be considered for determining breakpoints") parser.add_argument("-b", "--breakpoint_bed", required=False, type=argparse.FileType('w'), help="Write bedfile with coordinates of breakpoint positions to supplied path.") - parser.add_argument("-v", "--version", action='version', version='%(prog)s 0.2.0') + parser.add_argument("-v", "--version", action='version', version='%(prog)s 0.2.2') parser.add_argument("-p", "--plot_path", default=None, required=False, type=directory_path, help="If plot_path is specified will write a coverage plot for every UTR in that directory.") parser.add_argument("-html", "--html_file", default=None, required=False, type=argparse.FileType('w'),
--- a/dapars.xml Fri Oct 30 06:58:57 2015 -0400 +++ b/dapars.xml Fri Oct 30 07:19:14 2015 -0400 @@ -1,4 +1,4 @@ -<tool id="dapars" name="dapars" version="0.2.1"> +<tool id="dapars" name="dapars" version="0.2.2"> <description>infer de-novo alternative polyadenylation from rna-seq</description> <requirements> <requirement type="package" version="1.9">numpy</requirement> @@ -6,6 +6,7 @@ <requirement type="package" version="1">matplotlib_1_4_runtime_dependencies</requirement> <requirement type="package" version="1.4">matplotlib</requirement> <requirement type="package" version="0.7.5">tabulate</requirement> + <requirement type="package" version="2.22">bedtools</requirement> </requirements> <stdio> <exit_code range="1:" />