Mercurial > repos > mvdbeek > add_input_name_as_column

annotate add_input_name_as_column.xml @ 0:bfebefdd5ba4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial Commit.
author mvdbeek
date Mon, 29 Dec 2014 21:26:29 +0100
parents
children 07d2cbf43b51
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
1 <tool id="addName" name="Add input name as column" version="0.1">
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
2 <description>to an existing tabular file</description>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
3 <command interpreter="python">add_input_name_as_column.py
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
4 --input "$input"
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
5 --label "$input.name"
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
6 --output "$output"
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
7 #if $header.contains_header=="yes":
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
8 --header "$header.colname"
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
9 #end if
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
10 </command>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
11 <inputs>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
12 <param format="tabular" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
13 <conditional name="header">
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
14 <param name="contains_header" type="select" label="input contains a header line?" >
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
15 <option value="yes" selected="true">Yes</option>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
16 <option value="no">No</option>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
17 </param>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
18 <when value="yes">
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
19 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line">
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
20 <validator type="empty_field" message="please add a column header"/>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
21 </param>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
22 </when>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
23 <when value="no">
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
24 </when>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
25 </conditional>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
26 </inputs>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
27 <outputs>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
28 <data name="output" format="tabular" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
29 </outputs>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
30 <tests>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
31 <test>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
32 <param name="input" value="signature.tab" ftype="tabular" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
33 <param name="contains_header" value="yes" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
34 <param name="colname" value="sample" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
35 <output name="output" file="signature_with_header.tab" ftype="tabular"/>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
36 </test>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
37 <test>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
38 <param name="input" value="signature.tab" ftype="tabular" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
39 <param name="contains_header" value="no" />
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
40 <output name="output" file="signature_without_header.tab" ftype="tabular"/>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
41 </test>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
42 </tests>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
43 <help>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
44
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
45 .. class:: infomark
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
46
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
47 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
48
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
49 -----
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
50
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
51 **What it does**
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
52
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
53 Adds a new column with the name of the input file as it appears in the history.
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
54 Written by Marius van den Beek, m.vandenbeek at gmail . com
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
55 </help>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
56 </tool>
bfebefdd5ba4 Initial Commit.
mvdbeek
parents:
diff changeset
57