Mercurial > repos > morinlab > package_htslib_1_3_2

changeset 0:fe3e29a916e5 draft default tip

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author morinlab
date Sun, 04 Dec 2016 15:38:45 -0500
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files tool_dependencies.xml
diffstat 1 files changed, 20 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Dec 04 15:38:45 2016 -0500
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="htslib" version="1.3.2">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2</action>
+        <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+        <action type="shell_command">make</action>
+        <action type="shell_command">make install</action>
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+          <environment_variable action="set_to" name="HTSLIB_ROOT">$INSTALL_DIR</environment_variable>
+          <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+          <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+        </action>
+      </actions>
+    </install>
+    <readme />
+  </package>
+</tool_dependency>