Mercurial > repos > morinlab > package_htslib_1_3_2

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author morinlab
date Sun, 04 Dec 2016 15:38:45 -0500
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<?xml version="1.0"?>
<tool_dependency>
  <package name="htslib" version="1.3.2">
    <install version="1.0">
      <actions>
        <action type="download_by_url">https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2</action>
        <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
        <action type="shell_command">make</action>
        <action type="shell_command">make install</action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
          <environment_variable action="set_to" name="HTSLIB_ROOT">$INSTALL_DIR</environment_variable>
          <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
          <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
        </action>
      </actions>
    </install>
    <readme />
  </package>
</tool_dependency>