Mercurial > repos > morinlab > package_ensembl_vep_perl_environment_84

changeset 0:9976000ce924 draft default tip

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author morinlab
date Sat, 03 Dec 2016 18:54:45 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 34 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Dec 03 18:54:45 2016 -0500
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mysql" version="6.1.0">
+        <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ensembl_vep_perl_env" version="84">
+        <install version="1.0">
+            <actions>
+                <action type="set_environment_for_install">
+                     <repository changeset_revision="766f27cb3cd7" name="package_mysql_6_1_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                          <package name="mysql" version="6.1.0" />
+                     </repository>
+                </action>
+                <action type="setup_perl_environment">
+                  <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <package name="perl" version="5.18.1" />
+                  </repository>
+                  <package>LWP::Simple</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-Protocol-https-6.04.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/Archive-Zip-1.59.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/T/TI/TIMB/DBI-1.636.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/M/MI/MICHIELB/DBD-mysql-4.037.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.38.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/Module-Build-0.4220.tar.gz</package>
+                  <!-- <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007000.tar.gz</package>
+                  <package>http://search.cpan.org/CPAN/authors/id/M/MA/MAKAMAKA/JSON-2.90.tar.gz</package> --> 
+              </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>