view tool_dependencies.xml @ 3:f81d871e47d4 draft default tip

Uploaded

<?xml version="1.0"?>
<tool_dependency>
  <package name="perl" version="5.18.1">
    <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="libgd" version="2.1.0">
    <repository changeset_revision="1db2e8619504" name="package_libgd_2_1" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="circos_perl_environment" version="0.69">
    <install version="1.0">
      <actions>
        <action type="set_environment_for_install">
          <repository changeset_revision="1db2e8619504" name="package_libgd_2_1" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="libgd" version="2.1.0" />
          </repository>
        </action>
        <action type="setup_perl_environment">
          <repository changeset_revision="95dad0955d7e" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="perl" version="5.18.1" />
          </repository>
          <package>https://cpan.metacpan.org/authors/id/T/TL/TLINDEN/Config-General-2.55.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN/Font-TTF-1.02.tar.gz</package>
          <package>http://circos.ca/distribution/lib/GD-2.53.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/A/AD/ADAMK/List-MoreUtils-0.33.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/A/AB/ABW/Math-Bezier-0.01.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.06.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI/Math-VecStat-0.08.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Params-Validate-1.07.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/S/SA/SANKO/Readonly-1.04.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL/Regexp-Common-2011121001.tar.gz</package> 
          <package>https://cpan.metacpan.org/authors/id/S/SW/SWMCD/Set-IntSpan-1.16.tar.gz</package>
          <package>https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/Text-Format-0.58.tar.gz</package>
          <package>SVG</package>
          <package>Clone</package>
          <package>Params::Validate</package>
          <package>Statistics::Basic</package>
          <package>IO::String</package>
        </action>
      </actions>
    </install> 
  </package>
  <package name="circos" version="0.69">
    <install version="1.0">
      <actions>
        <action type="download_by_url">http://circos.ca/distribution/circos-0.69.tgz</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="set_to" name="CIRCOS_INSTALL_DIR">$INSTALL_DIR</environment_variable>
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>