Mercurial > repos > morinlab > package_bamutil_1_0_13
comparison tool_dependencies.xml @ 0:16e42e0b54a4 draft default tip
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| author | morinlab |
|---|---|
| date | Sun, 04 Dec 2016 17:58:49 -0500 |
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| -1:000000000000 | 0:16e42e0b54a4 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="libstatgen" version="1.0.13"> | |
| 4 <repository changeset_revision="5178c851b7f4" name="package_libstatgen_1_0_13" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="bamutil" version="1.0.13"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz</action> | |
| 10 <action type="set_environment_for_install"> | |
| 11 <repository changeset_revision="d1a368ee18a1" name="package_libstatgen_1_0_13" owner="morinlab" toolshed="http://galaxy-morinlab.mbb.sfu.ca:9009"> | |
| 12 <package name="libstatgen" version="1.0.13" /> | |
| 13 </repository> | |
| 14 </action> | |
| 15 <action type="shell_command">make LIB_PATH_GENERAL=${LIBSTATGEN_INSTALL_DIR}</action> | |
| 16 <action type="move_directory_files"> | |
| 17 <source_directory>.</source_directory> | |
| 18 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 19 </action> | |
| 20 <action type="set_environment"> | |
| 21 <environment_variable action="set_to" name="BAMUTIL_INSTALL_DIR">$INSTALL_DIR</environment_variable> | |
| 22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 23 </action> | |
| 24 </actions> | |
| 25 </install> | |
| 26 </package> | |
| 27 </tool_dependency> |
