Mercurial > repos > morinlab > package_bamutil_1_0_13
changeset 0:16e42e0b54a4 draft default tip
Uploaded
| author | morinlab |
|---|---|
| date | Sun, 04 Dec 2016 17:58:49 -0500 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 27 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun Dec 04 17:58:49 2016 -0500 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="libstatgen" version="1.0.13"> + <repository changeset_revision="5178c851b7f4" name="package_libstatgen_1_0_13" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="bamutil" version="1.0.13"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="d1a368ee18a1" name="package_libstatgen_1_0_13" owner="morinlab" toolshed="http://galaxy-morinlab.mbb.sfu.ca:9009"> + <package name="libstatgen" version="1.0.13" /> + </repository> + </action> + <action type="shell_command">make LIB_PATH_GENERAL=${LIBSTATGEN_INSTALL_DIR}</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="BAMUTIL_INSTALL_DIR">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>