|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="libstatgen" version="1.0.13">
|
|
|
4 <repository changeset_revision="5178c851b7f4" name="package_libstatgen_1_0_13" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="bamutil" version="1.0.13">
|
|
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
|
9 <action type="download_by_url">https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz</action>
|
|
|
10 <action type="set_environment_for_install">
|
|
|
11 <repository changeset_revision="d1a368ee18a1" name="package_libstatgen_1_0_13" owner="morinlab" toolshed="http://galaxy-morinlab.mbb.sfu.ca:9009">
|
|
|
12 <package name="libstatgen" version="1.0.13" />
|
|
|
13 </repository>
|
|
|
14 </action>
|
|
|
15 <action type="shell_command">make LIB_PATH_GENERAL=${LIBSTATGEN_INSTALL_DIR}</action>
|
|
|
16 <action type="move_directory_files">
|
|
|
17 <source_directory>.</source_directory>
|
|
|
18 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
19 </action>
|
|
|
20 <action type="set_environment">
|
|
|
21 <environment_variable action="set_to" name="BAMUTIL_INSTALL_DIR">$INSTALL_DIR</environment_variable>
|
|
|
22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
23 </action>
|
|
|
24 </actions>
|
|
|
25 </install>
|
|
|
26 </package>
|
|
|
27 </tool_dependency>
|
