comparison mutationseq.xml @ 2:7de2cc3a24af draft default tip

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1:2864eb962e5a

  #end if
    
  --threshold $advancedsettings.filter_prob

  | grep -v ".*no somatic mutation calls.*" >> ./output_noheader;
  echo "##fileformat=VCFv4.2
  #CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO" > ./minimal_vcf_header;
  cat ./minimal_vcf_header ./output_noheader > $output
  #if $interval
    ; done
  #end if
  ;

2:7de2cc3a24af

  #end if
    
  --threshold $advancedsettings.filter_prob

  | grep -v ".*no somatic mutation calls.*" >> ./output_noheader;
  echo "\##fileformat=VCFv4.2" > ./minimal_vcf_header;
  echo "#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO" >> ./minimal_vcf_header;
  cat ./minimal_vcf_header ./output_noheader > $output
  #if $interval
    ; done
  #end if
  ;