Mercurial > repos > morinlab > merge

view merge.xml @ 1:185b0aba7d8e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author morinlab
date Sun, 04 Dec 2016 18:29:23 -0500
parents a39905a6413e
children
line wrap: on
line source

<tool id="merge" name="Merge Collections" version="1.0.0">
  <description> 
  Merge a Collection of Files
  </description>
  <command>

  touch list_of_files.txt;
  #for $f in $data_collection:
    echo $f >> list_of_files.txt;
  #end for

  Rscript $__tool_directory__/merge.R list_of_files.txt $order $output $header 2>&amp;1;

  </command>
  <inputs>
    <param type="data_collection" format="txt" collection_type="list"  name="data_collection"/>
    <param type="data" format="txt" name="order" label="Contig Order File"/>
    <param type="boolean" name="header" label="Do Files Contain Headers?" checked="True" truevalue="TRUE" falsevalue="FALSE"/> 
  </inputs>
  <outputs>
    <data format="txt" name="output"/>
  </outputs>
</tool>