Mercurial > repos > morinlab > cnv2igv

changeset 2:41b99b6dcfdc draft default tip

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Uploaded
author morinlab
date Mon, 05 Dec 2016 14:22:48 -0500
parents a81a8c524d3d
children
files cnv2igv.xml
diffstat 1 files changed, 1 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/cnv2igv.xml	Mon Dec 05 14:22:04 2016 -0500
+++ b/cnv2igv.xml	Mon Dec 05 14:22:48 2016 -0500
@@ -1,14 +1,9 @@
 <tool id="cnv2igv" name="cnv2igv" version="1.0">
 	<description>VarDict is a variant discovery program. It can run in single sample, paired sample, or amplicon bias aware modes.</description>
 
-	<requirements>
-		<requirement type="package" version="1.0">cnv2igv</requirement>
-		<requirement type="set_environment">CNV2IGV_DIR</requirement>
-	</requirements> 
-
 	<command>
 	
-		python \$CNV2IGV_DIR/cnv2igv.py 
+		python $__tool_directory__/cnv2igv.py 
 		
 		#if $sample_select.seqortitan == "seq"
 			--mode sequenza --sequenza_sample $sample_select.sequenza.display_name