# HG changeset patch
# User morinlab
# Date 1480965768 18000
# Node ID 41b99b6dcfdcc33c0893c53d1139aed57f8cfdf8
# Parent  a81a8c524d3dc156ff1e31a77a0024e71335c84d
Uploaded

diff -r a81a8c524d3d -r 41b99b6dcfdc cnv2igv.xml
--- a/cnv2igv.xml	Mon Dec 05 14:22:04 2016 -0500
+++ b/cnv2igv.xml	Mon Dec 05 14:22:48 2016 -0500
@@ -1,14 +1,9 @@
 <tool id="cnv2igv" name="cnv2igv" version="1.0">
 	<description>VarDict is a variant discovery program. It can run in single sample, paired sample, or amplicon bias aware modes.</description>
 
-	<requirements>
-		<requirement type="package" version="1.0">cnv2igv</requirement>
-		<requirement type="set_environment">CNV2IGV_DIR</requirement>
-	</requirements> 
-
 	<command>
 	
-		python \$CNV2IGV_DIR/cnv2igv.py 
+		python $__tool_directory__/cnv2igv.py 
 		
 		#if $sample_select.seqortitan == "seq"
 			--mode sequenza --sequenza_sample $sample_select.sequenza.display_name