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4
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6 <package name="macs14" version="1.4.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs/macs.tar.gz?raw=true</action>
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10 <action type="shell_command">sudo su</action>
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11 <action type="shell_command">python setup.py install</action>
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12 <action type="move_directory_files">
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13 <source_directory>bin</source_directory>
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14 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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15 </action>
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16 <action type="move_directory_files">
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17 <source_directory>lib</source_directory>
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18 <destination_directory>$INSTALL_DIR/lib</destination_directory>
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19 </action>
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20 <action type="set_environment">
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21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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22 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>Macs depends on having python2.6 installed on all nodes of the work cluster</readme>
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27 </package>
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28 </tool_dependency> |
