Mercurial > repos > modencode-dcc > idr_package

changeset 16:24055dbb63b2 draft

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Uploaded
author modencode-dcc
date Mon, 21 Jan 2013 11:21:45 -0500
parents b033e6082611
children 46f86cea5a47
files idrToolDef.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/idrToolDef.xml	Mon Jan 21 11:16:57 2013 -0500
+++ b/idrToolDef.xml	Mon Jan 21 11:21:45 2013 -0500
@@ -17,7 +17,7 @@
     <requirement type="set_environment">SCRIPT_PATH</requirement>
   </requirements>
   <description>Consistency Analysis on a pair of narrowPeak files</description>
-  <command interpreter="Rscript">batch-consistency-analysis.r $input1 $input2 $halfwidth $overlap $option $sigvalue $gtable $rout $aboveIDR $ratio $emSav $uriSav $SCRIPT_PATH</command>
+  <command interpreter="Rscript">batch-consistency-analysis.r \$SCRIPT_PATH $input1 $input2 $halfwidth $overlap $option $sigvalue $gtable $rout $aboveIDR $ratio $emSav $uriSav </command>
   <inputs>
     <param format="narrowPeak" name="input1" type="data" label="First NarrowPeak File"/>
     <param format="narrowPeak" name="input2" type="data" label="Second NarrowPeak File"/>