Mercurial > repos > mingchen0919 > test_galaxy_tool_generator

changeset 5:c4b9451503bf draft

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planemo upload
author mingchen0919
date Sat, 28 Oct 2017 23:46:10 -0400
parents 1649c9af02cc
children 77acf82a5880
files deseq2.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq2.xml	Sat Oct 28 23:46:10 2017 -0400
@@ -0,0 +1,18 @@
+<tool id="tool_template" name="tool name" version="1.0.0">
+  <requirements>
+    <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
+    <requirement type="package" version="1.20.0">r-getopt</requirement>
+    <requirement type="package" version="1.3">r-rmarkdown</requirement>
+    <requirement type="package" version="0.3.5">r-htmltools</requirement>
+    <requirement type="package" version="0.5.0">r-dplyr</requirement>
+  </requirements>
+  <description>some descriptions about the tool.</description>
+  <command>
+                    Rscript '${__tool_directory__}/tool_template_render.R'
+                        -e $echo
+                        -r $report
+                        -d $report.files_path
+                        -s $sink_message
+                        -t '${__tool_directory__}/tool_template.Rmd
+                    </command>
+</tool>