Mercurial > repos > mingchen0919 > statonlab_hmmscan
changeset 11:65f06099f0f3 draft default tip
planemo upload commit 690c4bb06a00f1a035c746c3d283a3026ecf6319-dirty
| author | mingchen0919 |
|---|---|
| date | Sun, 16 Sep 2018 10:59:01 -0400 |
| parents | 6ec32fcdba69 |
| children | |
| files | rmarkdown_report.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/rmarkdown_report.xml Sun Sep 16 10:24:49 2018 -0400 +++ b/rmarkdown_report.xml Sun Sep 16 10:59:01 2018 -0400 @@ -43,15 +43,15 @@ help="A significant genes file from the <code>aurora_deseq2</code> tool." optional="False" format="txt,csv" multiple="False"/> <param type="text" name="protein_sequences_url" label="URL to a protein sequences file" optional="False"/> - <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold" + <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold" optional="True" help="report models <= this E-value threshold in output [10.0] (x>0)" optional="False" value="10"/> - <param type="text" name="score_threshold" argument="-T" label="Score threshold" + <param type="text" name="score_threshold" argument="-T" label="Score threshold" optional="True" help="report models >= this score threshold in output" optional="False"/> - <param type="text" name="domE" argument="--domE" label="domains E-value threshold" + <param type="text" name="domE" argument="--domE" label="domains E-value threshold" optional="True" help="report domains <= this E-value threshold in output [10.0] (x>0)" optional="False" value="10"/> - <param type="text" name="domT" argument="--domT" label="domains score threshold" + <param type="text" name="domT" argument="--domT" label="domains score threshold" optional="True" help="report domains >= this score cutoff in output" optional="False"/> <param type="boolean" name="best_hit" label="Best Hit" help="Only return best hit for each query sequence" optional="False" truevalue="NO_ARGUMENT_YES" falsevalue="NO_ARGUMENT_NO"/>