# HG changeset patch
# User mingchen0919
# Date 1537109941 14400
# Node ID 65f06099f0f3af944d26ddfaeae97c87443ee928
# Parent  6ec32fcdba699ad74edcc4630dff675b95c5f8e0
planemo upload commit 690c4bb06a00f1a035c746c3d283a3026ecf6319-dirty

diff -r 6ec32fcdba69 -r 65f06099f0f3 rmarkdown_report.xml
--- a/rmarkdown_report.xml	Sun Sep 16 10:24:49 2018 -0400
+++ b/rmarkdown_report.xml	Sun Sep 16 10:59:01 2018 -0400
@@ -43,15 +43,15 @@
                help="A significant genes file from the <code>aurora_deseq2</code> tool." optional="False"
                format="txt,csv" multiple="False"/>
         <param type="text" name="protein_sequences_url" label="URL to a protein sequences file" optional="False"/>
-        <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold"
+        <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold" optional="True"
                help="report models &lt;= this E-value threshold in output  [10.0]  (x&gt;0)" optional="False"
                value="10"/>
-        <param type="text" name="score_threshold" argument="-T" label="Score threshold"
+        <param type="text" name="score_threshold" argument="-T" label="Score threshold" optional="True"
                help="report models &gt;= this score threshold in output" optional="False"/>
-        <param type="text" name="domE" argument="--domE" label="domains E-value threshold"
+        <param type="text" name="domE" argument="--domE" label="domains E-value threshold" optional="True"
                help="report domains &lt;= this E-value threshold in output  [10.0]  (x&gt;0)" optional="False"
                value="10"/>
-        <param type="text" name="domT" argument="--domT" label="domains score threshold"
+        <param type="text" name="domT" argument="--domT" label="domains score threshold" optional="True"
                help="report domains &gt;= this score cutoff in output" optional="False"/>
         <param type="boolean" name="best_hit" label="Best Hit" help="Only return best hit for each query sequence"
                optional="False" truevalue="NO_ARGUMENT_YES" falsevalue="NO_ARGUMENT_NO"/>