Mercurial > repos > mingchen0919 > statonlab_hmmscan
comparison rmarkdown_report.xml @ 11:65f06099f0f3 draft default tip
planemo upload commit 690c4bb06a00f1a035c746c3d283a3026ecf6319-dirty
| author | mingchen0919 |
|---|---|
| date | Sun, 16 Sep 2018 10:59:01 -0400 |
| parents | 6ec32fcdba69 |
| children |
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| 10:6ec32fcdba69 | 11:65f06099f0f3 |
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| 41 <inputs> | 41 <inputs> |
| 42 <param type="data" name="significant_genes" label="Significant Genes" | 42 <param type="data" name="significant_genes" label="Significant Genes" |
| 43 help="A significant genes file from the <code>aurora_deseq2</code> tool." optional="False" | 43 help="A significant genes file from the <code>aurora_deseq2</code> tool." optional="False" |
| 44 format="txt,csv" multiple="False"/> | 44 format="txt,csv" multiple="False"/> |
| 45 <param type="text" name="protein_sequences_url" label="URL to a protein sequences file" optional="False"/> | 45 <param type="text" name="protein_sequences_url" label="URL to a protein sequences file" optional="False"/> |
| 46 <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold" | 46 <param type="text" name="evalue_threshold" argument="-E" label="Evalue threshold" optional="True" |
| 47 help="report models <= this E-value threshold in output [10.0] (x>0)" optional="False" | 47 help="report models <= this E-value threshold in output [10.0] (x>0)" optional="False" |
| 48 value="10"/> | 48 value="10"/> |
| 49 <param type="text" name="score_threshold" argument="-T" label="Score threshold" | 49 <param type="text" name="score_threshold" argument="-T" label="Score threshold" optional="True" |
| 50 help="report models >= this score threshold in output" optional="False"/> | 50 help="report models >= this score threshold in output" optional="False"/> |
| 51 <param type="text" name="domE" argument="--domE" label="domains E-value threshold" | 51 <param type="text" name="domE" argument="--domE" label="domains E-value threshold" optional="True" |
| 52 help="report domains <= this E-value threshold in output [10.0] (x>0)" optional="False" | 52 help="report domains <= this E-value threshold in output [10.0] (x>0)" optional="False" |
| 53 value="10"/> | 53 value="10"/> |
| 54 <param type="text" name="domT" argument="--domT" label="domains score threshold" | 54 <param type="text" name="domT" argument="--domT" label="domains score threshold" optional="True" |
| 55 help="report domains >= this score cutoff in output" optional="False"/> | 55 help="report domains >= this score cutoff in output" optional="False"/> |
| 56 <param type="boolean" name="best_hit" label="Best Hit" help="Only return best hit for each query sequence" | 56 <param type="boolean" name="best_hit" label="Best Hit" help="Only return best hit for each query sequence" |
| 57 optional="False" truevalue="NO_ARGUMENT_YES" falsevalue="NO_ARGUMENT_NO"/> | 57 optional="False" truevalue="NO_ARGUMENT_YES" falsevalue="NO_ARGUMENT_NO"/> |
| 58 </inputs> | 58 </inputs> |
| 59 <outputs> | 59 <outputs> |