Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump

changeset 12:d330ce2d4663 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit affb362adeb095389646b0c51738d24c2de3838d-dirty
author mingchen0919
date Wed, 27 Sep 2017 16:49:22 -0400
parents d4a9c31d0046
children 66bc1016ec2a
files fastq_dump_pe.Rmd
diffstat 1 files changed, 9 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump_pe.Rmd	Wed Sep 27 16:43:52 2017 -0400
+++ b/fastq_dump_pe.Rmd	Wed Sep 27 16:49:22 2017 -0400
@@ -46,3 +46,12 @@
 }
 ```
 
+# Rename files
+
+```{r}
+old_files = paste0('./read_files_directory/', list.files('./read_files_directory'))
+new_files = gsub('_1', '_forward', old_files)
+new_files = gsub('_2', '_reverse', new_files)
+file.copy('./read_files_directory/')
+```
+