Mercurial > repos > mingchen0919 > rmarkdown_fastq_dump
changeset 16:883f102eb227 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump commit affb362adeb095389646b0c51738d24c2de3838d-dirty
| author | mingchen0919 |
|---|---|
| date | Wed, 27 Sep 2017 17:06:38 -0400 |
| parents | 627c487d22e3 |
| children | cf1233051a9b |
| files | fastq_dump_pe_render.R |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/fastq_dump_pe_render.R Wed Sep 27 17:05:22 2017 -0400 +++ b/fastq_dump_pe_render.R Wed Sep 27 17:06:38 2017 -0400 @@ -54,7 +54,8 @@ library(dplyr) #----- 1. create the report directory ------------------------ -system(paste0('mkdir -p ', opt$output_dir)) +# system(paste0('mkdir -p ', opt$output_dir)) +dir.create(opt$output_dir) #----- 2. generate Rmd files with Rmd templates -------------- # a. templates without placeholder variables: