Mercurial > repos > mingchen0919 > rmarkdown_deseq2
changeset 2:754a36851c6b draft
2.0.1
| author | mingchen0919 |
|---|---|
| date | Tue, 27 Feb 2018 14:07:10 -0500 |
| parents | 8b324ea5dc8a |
| children | a520a6c5e111 |
| files | DESeq.xml DESeq_render.R DESeq_results.xml |
| diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/DESeq.xml Tue Feb 27 13:55:29 2018 -0500 +++ b/DESeq.xml Tue Feb 27 14:07:10 2018 -0500 @@ -1,4 +1,4 @@ -<tool name="Tool report" id='aurora_tool_report' version="2.0.1"> +<tool name="DESeq Analysis" id='deseq2' version="2.0.1"> <description> "some description" </description> @@ -66,7 +66,8 @@ </inputs> <outputs> <data name="report" format="html" label="DESeq Analysis on ${on_string}"/> - <data format="txt" name="sink_message" label="Warnings and Errors on ${on_string}" from_work_dir="warnings_and_errors.txt"/> + <data format="txt" name="sink_message" label="Warnings and Errors on" + from_work_dir="warnings_and_errors.txt"/> <data name="deseq_workspace" format="rdata" label="R workspace: DESeq analysis on ${on_string}"/> </outputs> <citations>
--- a/DESeq_render.R Tue Feb 27 13:55:29 2018 -0500 +++ b/DESeq_render.R Tue Feb 27 14:07:10 2018 -0500 @@ -10,7 +10,6 @@ library(getopt) library(rmarkdown) -library(dplyr) library(DESeq2) library(pheatmap) library(DT)
--- a/DESeq_results.xml Tue Feb 27 13:55:29 2018 -0500 +++ b/DESeq_results.xml Tue Feb 27 14:07:10 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="DESeq_results" name="DESeq2: Results" version="2.0.1"> +<tool id="deseq_results" name="DESeq2: Results" version="2.0.1"> <requirements> <requirement type="package" version="1.15.0.6-0">pandoc</requirement> <requirement type="package" version="1.20.0">r-getopt</requirement>