Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

changeset 3:cc757ca739fe draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 6df7b8ef3a603f7792ed5815ff324ede8a7b2b0b-dirty
author mingchen0919
date Mon, 25 Sep 2017 14:52:51 -0400
parents f8d0ad99fe9b
children 2657b486f423
files collection_list.xml
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/collection_list.xml	Mon Sep 25 14:34:53 2017 -0400
+++ b/collection_list.xml	Mon Sep 25 14:52:51 2017 -0400
@@ -18,7 +18,6 @@
                 -d $report.files_path
                 -o $list_collection
 
-
                 -t '${__tool_directory__}/collection_list.Rmd'
         ]]>
     </command>
@@ -29,7 +28,7 @@
     <outputs>
         <data format="html" name="report" label="fastqc report" />
         <collection type="list" name="list_collection">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="files_directory" />
+            <discover_datasets pattern="__name_and_ext__" directory="files_directory" />
         </collection>
     </outputs>
 </tool>
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