Mercurial > repos > mingchen0919 > rmarkdown_collection_builder
changeset 48:68da32dbc6e2 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit a7ad932a1725b4ef26d522040c5395ae0026fb35-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 26 Sep 2017 12:34:02 -0400 |
| parents | fb05ca474127 |
| children | 7a65e6827c25 |
| files | collection_list_paired.Rmd collection_list_paired_render.R collection_paired_render.R |
| diffstat | 3 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/collection_list_paired.Rmd Tue Sep 26 12:24:21 2017 -0400 +++ b/collection_list_paired.Rmd Tue Sep 26 12:34:02 2017 -0400 @@ -67,4 +67,3 @@ file.copy(paste0('./reverse_files_directory/', original_files), paste0('./files_directory/', new_files)) ``` -
--- a/collection_list_paired_render.R Tue Sep 26 12:24:21 2017 -0400 +++ b/collection_list_paired_render.R Tue Sep 26 12:34:02 2017 -0400 @@ -82,4 +82,4 @@ render('list_paired_collection.Rmd', output_file = opt$list_paired_collection_html) -#-------4. manipulate outputs ----------------------------- +#-------4. manipulate outputs ----------------------------- \ No newline at end of file
--- a/collection_paired_render.R Tue Sep 26 12:24:21 2017 -0400 +++ b/collection_paired_render.R Tue Sep 26 12:34:02 2017 -0400 @@ -70,10 +70,10 @@ gsub('FORWARD_INPUT', opt$forward_input, x) }) %>% (function(x) { - gsub('REVERSE_INPUT', opt$reverse_forward_input, x) + gsub('REVERSE_INPUT', opt$reverse_input, x) }) %>% (function(x) { - gsub('OUTPUT_DIR', opt$reverse_forward_input, x) + gsub('OUTPUT_DIR', opt$paired_collection_dir, x) }) %>% (function(x) { fileConn = file('paired_collection.Rmd')