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view 1-index-genome.sh @ 1:44632fc0fc15 draft

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author mingchen0919
date Wed, 20 Jun 2018 11:33:55 -0400
parents a1448d1f2ee4
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# create genome directory for genome indices.
mkdir -p ${X_d}/genomeDir

STAR \
  --runMode genomeGenerate \
  --genomeDir ${X_d}/genomeDir \
  --genomeFastaFiles $( echo ${X_A} | sed 's/,/ /g' ) \
  --sjdbGTFfile ${X_B} \
  --sjdbOverhang ${X_C} \
  > genome-indexing.log.txt 2>&1