Mercurial > repos > mingchen0919 > gtg_star_demo

annotate 1-index-genome.sh @ 1:44632fc0fc15 draft

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author mingchen0919
date Wed, 20 Jun 2018 11:33:55 -0400
parents a1448d1f2ee4
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1 # create genome directory for genome indices.
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2 mkdir -p ${X_d}/genomeDir
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3
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4 STAR \
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5 --runMode genomeGenerate \
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6 --genomeDir ${X_d}/genomeDir \
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7 --genomeFastaFiles $( echo ${X_A} | sed 's/,/ /g' ) \
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8 --sjdbGTFfile ${X_B} \
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9 --sjdbOverhang ${X_C} \
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10 > genome-indexing.log.txt 2>&1
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