Mercurial > repos > mingchen0919 > aurora_htseq_site

comparison 01_htseq_count_analysis.Rmd @ 6:a40d5db8687e draft

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planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
author mingchen0919
date Mon, 14 May 2018 11:00:01 -0400
parents cf3fde5d0834
children 467a1895c718
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5:cf3fde5d0834 6:a40d5db8687e
6 --- 6 ---
7 7
8 ## Job script 8 ## Job script
9 9
10 ```{bash, echo=FALSE} 10 ```{bash, echo=FALSE}
11 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh 11 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh > ${REPORT_FILES_PATH}/log.txt 2>&1
12 ``` 12 ```
13 13
14 ```{r echo=FALSE, comment='', results='asis'} 14 ```{r echo=FALSE, comment='', results='asis'}
15 cat('```bash\n') 15 cat('```bash\n')
16 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/htseq-count.sh')), sep = '\n') 16 cat(readLines(paste0(Sys.getenv('REPORT_FILES_PATH'), '/htseq-count.sh')), sep = '\n')