Mercurial > repos > mingchen0919 > aurora_htseq_site

annotate htseq_count_site.sh @ 3:6e69c93fe491 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix error
author mingchen0919
date Tue, 13 Mar 2018 10:09:13 -0400
parents 9be3a8754fb3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
1 Rscript '${__tool_directory__}/htseq_count_render.R'
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
2
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
3 -e $echo
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
4 -o $report
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
5 -d $report.files_path
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
6 -s $sink_message
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
7 -t '${__tool_directory__}'
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
8
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
9 -A '$alignment_files'
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
10 -B '$sample_names'
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
11 -G $gff
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
12 -f $format
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
13 -r $order
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
14 -S $stranded
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
15 -a $minaqual
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
16 -T $feature_type
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
17 -i $idattr
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
18 -m $mode
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
19 -c $count
9be3a8754fb3 initial
mingchen0919
parents:
diff changeset
20 -O $count_rdata