Mercurial > repos > mingchen0919 > aurora_htseq
changeset 22:ad2ceb05d152 draft
planemo upload commit 9d80f8019f1eb21b0bc6fdb4e3ae7684174f6ca4-dirty
| author | mingchen0919 |
|---|---|
| date | Fri, 30 Nov 2018 12:02:58 -0500 |
| parents | 69157062629f |
| children | 24558ebcc9c3 |
| files | rmarkdown_report.Rmd rmarkdown_report.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/rmarkdown_report.Rmd Thu Nov 29 22:18:47 2018 -0500 +++ b/rmarkdown_report.Rmd Fri Nov 30 12:02:58 2018 -0500 @@ -91,7 +91,7 @@ count_data = read.table(paste0(opt$X_d, '/counts.txt'), row.names = 1) sample_names = trimws(strsplit(opt$X_B, ',')[[1]]) colnames(count_data) = rep(sample_names, length = ncol(count_data)) -# kable(head(count_data)) + # modify column names count_data = data.frame(feature_id = rownames(count_data), count_data)
--- a/rmarkdown_report.xml Thu Nov 29 22:18:47 2018 -0500 +++ b/rmarkdown_report.xml Fri Nov 30 12:02:58 2018 -0500 @@ -7,7 +7,7 @@ <requirement type="package" version="1.20.0">r-getopt</requirement> <requirement type="package" version="1.6">r-rmarkdown</requirement> <requirement type="package" version="0.11.0">htseq</requirement> - <requirement type="package" version="0.4">r-dt</requirement> + <requirement type="package" version="0.2">r-dt</requirement> </requirements> <command><![CDATA[