Mercurial > repos > mingchen0919 > aurora_htseq
diff htseq_count_render.R @ 4:0fdb0d5f53ce draft
add rdata output
| author | mingchen0919 |
|---|---|
| date | Wed, 07 Mar 2018 01:37:59 -0500 |
| parents | db9da9716914 |
| children | aacd5f53ac99 |
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--- a/htseq_count_render.R Wed Mar 07 01:10:13 2018 -0500 +++ b/htseq_count_render.R Wed Mar 07 01:37:59 2018 -0500 @@ -23,15 +23,16 @@ spec_matrix = as.matrix( data.frame(stringsAsFactors=FALSE, long_flags = c("X_e", "X_o", "X_d", "X_s", "X_t", "X_A", "X_B", "X_G", - "X_f", "X_r", "X_S", "X_a", "X_T", "X_i", "X_m", "X_c"), + "X_f", "X_r", "X_S", "X_a", "X_T", "X_i", "X_m", "X_c", "X_O"), short_flags = c("e", "o", "d", "s", "t", "A", "B", "G", "f", "r", "S", - "a", "T", "i", "m", "c"), + "a", "T", "i", "m", "c", "O"), argument_mask_flags = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, - 1L, 1L, 1L), + 1L, 1L, 1L, 1L), data_type_flags = c("character", "character", "character", "character", "character", "character", "character", "character", "character", "character", "character", "character", - "character", "character", "character", "character") + "character", "character", "character", "character", + "character") ) ) opt = getopt(spec_matrix)