Mercurial > repos > mingchen0919 > aurora_htseq
comparison htseq_count_render.R @ 4:0fdb0d5f53ce draft
add rdata output
| author | mingchen0919 |
|---|---|
| date | Wed, 07 Mar 2018 01:37:59 -0500 |
| parents | db9da9716914 |
| children | aacd5f53ac99 |
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| 3:1545e24c9ba7 | 4:0fdb0d5f53ce |
|---|---|
| 21 | 21 |
| 22 | 22 |
| 23 spec_matrix = as.matrix( | 23 spec_matrix = as.matrix( |
| 24 data.frame(stringsAsFactors=FALSE, | 24 data.frame(stringsAsFactors=FALSE, |
| 25 long_flags = c("X_e", "X_o", "X_d", "X_s", "X_t", "X_A", "X_B", "X_G", | 25 long_flags = c("X_e", "X_o", "X_d", "X_s", "X_t", "X_A", "X_B", "X_G", |
| 26 "X_f", "X_r", "X_S", "X_a", "X_T", "X_i", "X_m", "X_c"), | 26 "X_f", "X_r", "X_S", "X_a", "X_T", "X_i", "X_m", "X_c", "X_O"), |
| 27 short_flags = c("e", "o", "d", "s", "t", "A", "B", "G", "f", "r", "S", | 27 short_flags = c("e", "o", "d", "s", "t", "A", "B", "G", "f", "r", "S", |
| 28 "a", "T", "i", "m", "c"), | 28 "a", "T", "i", "m", "c", "O"), |
| 29 argument_mask_flags = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, | 29 argument_mask_flags = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, |
| 30 1L, 1L, 1L), | 30 1L, 1L, 1L, 1L), |
| 31 data_type_flags = c("character", "character", "character", "character", | 31 data_type_flags = c("character", "character", "character", "character", |
| 32 "character", "character", "character", "character", | 32 "character", "character", "character", "character", |
| 33 "character", "character", "character", "character", | 33 "character", "character", "character", "character", |
| 34 "character", "character", "character", "character") | 34 "character", "character", "character", "character", |
| 35 "character") | |
| 35 ) | 36 ) |
| 36 ) | 37 ) |
| 37 opt = getopt(spec_matrix) | 38 opt = getopt(spec_matrix) |
| 38 #---------------------------------------------------- | 39 #---------------------------------------------------- |
| 39 | 40 |