view galaxy_outputs.sh @ 1:6da16f4e1e3b draft

update

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
if [ -e "rmarkdown_report.html" ]; then
  cp rmarkdown_report.html ${REPORT}
fi

if [ -e "index.html" ]; then
  cp index.html ${REPORT}
fi


if [ -e `*.ssr.fasta` ]; then
  cp `*.ssr.fasta` ${X_F}
fi