Mercurial > repos > mingchen0919 > aurora_findssrs
annotate galaxy_outputs.sh @ 1:6da16f4e1e3b draft
update
| author | mingchen0919 |
|---|---|
| date | Fri, 09 Nov 2018 12:23:25 -0500 |
| parents | 389ef73cf4e1 |
| children | dad0996ce0b7 |
| rev | line source |
|---|---|
| 0 | 1 # change directory to tool outputs directory |
| 2 cd ${REPORT_FILES_PATH} | |
| 3 | |
| 4 # copy outputs from tool outputs directory to corresponding galaxy output path | |
| 5 if [ -e "rmarkdown_report.html" ]; then | |
| 6 cp rmarkdown_report.html ${REPORT} | |
| 7 fi | |
| 8 | |
| 9 if [ -e "index.html" ]; then | |
| 10 cp index.html ${REPORT} | |
| 11 fi | |
| 12 | |
| 13 | |
| 14 if [ -e `*.ssr.fasta` ]; then | |
| 15 cp `*.ssr.fasta` ${X_F} | |
| 16 fi |